When the 568 Standard was originally published in 1990, the committee that was chartered with designating the wiring configuration of jacks and plugs decided upon what is known as the T568A configuration. The T568B configuration is still considered an "option" in the Standards, and as Daron noted above, is the same as the WECO (Western Electric) 258A wiring configuration.
US Federal Government publication NCS, FTR 1090-1997 recognizes only the T568A configuration.
As heathbus has pointed out above, from a strictly voice perspective, the T568A configuration sometimes offers advantages due to the fact that it has the second pair straddling the first, which allows sequential pair termination in the TR. That is to say, the positions of the first two pairs of the T568A configuration mimics the positions of the first two pairs of USOC configurations.
There is no consistent, measurable performance advantage to using either configuration.
Availability used to be a big issue, since about 90% of the installed base in North America is T568B, but with many 1st tier connectivity manufacturers now making "universally labeled" jacks and panels, that is no longer the case.
Joepc is mistaken in stating that "When you work with punch down panels you will see that they go by the 568 B scheme rather than A". Manufacturers have always made panels available in both configurations, until, as noted above, many switched to "universally labeled" products that obviated the stocking of both configurations by users.
This is more information than you want, I know. Sorry.
There's no big deal; as you stated, pick one, stick with it throughout the cable plant, and everything will be just fine. Don't worry about the patch cords, they work regardless of configuration.
Regards,
Phil Pearce, RCDD