bkast3,
You may have a significant number of issues to address here that may be better served asking your question in the Access forum, but I will try to address one or two.
If I read this correctly you now have 2 different front-ends and 2 different back-ends. Now you need to link the new db2 front-end to its back-end db2link. You do this by going into db2 and using the Tools, Database Utilities, Linked Table Manager to point to the correct database to use db2link. At that point the front-end and the back-end for db2 and db2link are completely independent of db1 and db1link on the surface.
However, there may be some issues with the VBA code. Someone will need to ensure that there are no hard-coded paths that link back to the original db1 files in any fashion. Also, you may have some issues between ADO and DAO references in your code. Some can be handled via Tools, References in the VBA Editor, but depending on how you distribute the database this may not be enough.
Now, all that being said, I am confused about you asking how to set this up since you stated that you converted the database. If you've converted it properly then you had to rename the new version (I usually suffix them with _ac97 or _ac2k as needed).
However, if you are asking of a quick way to perform the entire thing then you can convert the db1 and db1link files and rename them upon conversion to the new version. You do this by opening them in Access 2000 and it will ask you to convert or open the database. Then use the Linked Table Manager to set the proper link. I STRONGLY SUGGEST that you backup BOTH files before proceeding with any of this, just in case. Strange things happen upon conversion and if you have a Switchboard I would not use the convert method, but the following method.
Otherwise, I would create a new Access 2000 database and import all the items via Edit, Get External Data, Import from the Access 97 database into the new database. I would import all objects except for the Switchboard Form and its associated Switchboard Items table. They don't really convert well and should really be recreated or you should create your own. Do the same for both the front-end and back-end. Then use the Linked Table Manger as needed.
Hope this helps.