They will be stored in pw4.prm/pw5.prm (depending on the version of Procomm you are using). Keep in mind that this file contains just about all Procomm settings, and some might be machine or user-specific and cause issues when you copy the file amongst machines. Unfortunately, there is no way to use a script to set the colors as only a color profile can be set, not the individual colors in that profile.
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