Quit out of all your programs that you don't need until they can fit in memory. If that doesn't work, then you'll have to figure out what's swapping onto the file, comment that out of the startup scripts and reboot.
Actually I've been trying to upgrade fc1 to fc2, and in the process I got the error message:
Error enabling swap device: /var/swapfile: File too large.
This most likely means this swap partion has not been initialized.
This is the current swap information:
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