Try clearing CMOS or better go to the STANDARD CMOS SETUP page where the Drive Recognition is done and disable the HDD in question or set the option to AUTOMATIC...
Windows should still boot, but the BIOS may think that there is a fault and halts all booting...
Ben
"If it works don't fix it! If it doesn't use a sledgehammer..."
I had same problem when I wanted to replace the second drive with a 200GB one. 1 IDE drive and 1 SATA drive the I don't know if this helped cause the issue. Turns out that the boot info was on the second drive ntdetect...ect. ect. even though XP was on the c: drive.
Put second drive back in and check the root to see if those files are there. I ended up doing a fresh install with only one drive in and then put in new replacement drive.
If this is your problem perhaps someone here can help you keep from doing the fresh install. Sorry if this turns out to be of no help.
This is an old thread, but I got into the same fix..I'm working on your ideas. I also have Boot disk failure adn cannot get into windows so am limited to the tips above. but working on it.
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