You need to use the DSMAINT utility, and its pretty straightforward. The command is dsmaint migrate [{ /srcdsn:dsn1 /srcuser:user1 /srcpwdwd1}] [{/dstdsn:dsn2
/dstuser:user2 /dstpwdwd2}]
You will already have a new DB configured on SQL and a file DSN setup that points at it (dstdsn)
Check out the Presentation Server admin guide. If you are looking at the PS4 version, the Dsmaint command is explained on 368-371.
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