Actually, if it is the keysets that use three pairs, the 1st pair need to be reversed, that is Red is Tip and Green is Ring. We usually found it better to wire the jacks as standard USOC 3-pair, and reverse one end of the jumper at the station block out of the KSU.
And you're correct, that if you short the 1st pair, or forget to reverse the polarity, you'll pop the fuse and take out 6 stations at a time. Get a pair of non-conducting needlenose pliers for removing the bridge clips, and you'll be a happier camper.