Here's what I would do:
On the second (backup) server, set up different virtualSCSI channels for the backup systems for rootvg and datavgs.
In all a VIO client will have 4 vSCSI channels, 2 to each VIO server. Per VIO server one channel for rootvg virtualized disks and one channel for datavg virtualized disks. (It's my preferred setup anyway).
Start the backup LPARs without the vSCSI client adapters for the datavg disks present in their default profile. Don't delete the vtscsi devices on the VIO servers - they just dead-end on their vhost adapter because that vhost is not yet coupled to its designated vscsi adapter on the VIO client.
The LPAR will come up, won't find the paths to the datavg disks and have those disks as "Defined" and the VGs will not vary on.
When you need a backup LPAR to take over, DLPAR-add the vSCSI adapters and run cfgmgr on the backup LPAR (or restart it with a "takeover" profile with the vSCSI adapters present). The paths to the datavg disks will be discovered, the disks will be available and the datavgs will vary on.
HTH,
p5wizard