If your users are using ksh, bash, or csh, there should be a history file (.sh_history in ksh for example) in each user's home directory. If it's a fairly recent event, the history variable is set large enough and your users aren't savvy enough to delete or change the history, you could gather these up and grep them for rm commands.
Bear in mind, I've found that the history is 100% reliant - I've seen cases where I *know* I've done certain commands, checked the history for some reason and have not found entries ...
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