I usually use the distro's installation CD. Get to the drive partitioning part. Delete all partitions, make a big, single partition. Change the partition type (FAT32 LBA was 0xb I think). Then reboot with the Windows install CD or even a boot floppy. Format the empty partition (or even fdisk and make sure the partition type is set correctly and makes Windows happy), and install Windows.
I've fought with MS fdisk trying to delete extended and logical non-DOS partitions and failed, so that's why I use the installation/GNU fdisk program to remove Linux partitions.
I've used GNU fdisk to set the partition type to FAT32 and MS format got really aggravated with me, so that's why I do the redundant partition type change with MS fdisk.
You can also do a search for 'aefdisk'. It's a neat little utility that you can use to delete ALL partitions on your disk. The shareware version is sort of limited, but it still works. And it will fit on the same floppy you might use as a Win startup disk.
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