Sounds like an error in the database itself, try the following.
1. Create a new empty database.
2. Import all objects to this new database container.
3. If you have a problem with one or more tables, create them manually. Transfer the data manually, and RE-IMPORT one table to import the relations. Delete the extra table again.
If you try a repair first, then make sure that you have made a copy of the database before the repair.
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