What is going to plug into the port on the patch panel? How many pairs?
If we cable to a patch panel for single pair digital phones, it is one pair per port, on the spot where the Wht/Blu of the Cat-5 would terminate. If it is 2 pair hybrid phones, it is first pair on where the Wht/Blu would go and second pair to whre the Wht/Grn (568-B wiring) would go.
So, single pair, blue binder of the 50 pair, Wht/Blu pair to port 1's Wht/Blu punchdown. Wht/Org pair to port 2's Wht/Blu punchdown, and so forth. Skip the Vio/Slt pair. Start the orange binder, Wht/Blu pair on port 25 and down to 48.
2-pair, 50 pair's blue binder, wht/ble to port 1's wht/blu, wht/orn pair to port 1's wht/grn. Wht/Grn pair to port 2's wht/blu, and Wht/Brn to port 2's Wht/Grn. When you finish port 12, stow the Vio/Slt pair, start the orange binder at port 13, that will get you to port 24, and you'll need another piece of 50-pair to do 25-48