EJB 2.0 seems to be the default when you are trying to create EJBs for WAS 5.0. I have used them(briefly) and had no problems. However, mine were more simplistic because I was writing a service locator and only needed to use a the EJBHome.create() to validate.
My recommendation would be to check out WSAD(WebSphere Studio Application Developer) This will actually allow you to debug on a test server running inside WSAD. After that you can choose to bundle into and ear file. It will do most of the defining you need.
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