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True, i had forgotten about that.. I see what you are getting at, though I am not quite sure how I could accomplish that, as they are two separate projects. I'd really appreciate if you could elaborate on that..

Hey Dian, thanks for the reply.. Following your suggestion, I added command.add(">"); command.add("debug.log"); to my code. Still no exceptions or errors, not even a file called debug.log. Frustrating... Could you elaborate on your secondary suggestion? If I understood correctly you...

Hi, The problem is as follows, I am writing an analysis software, and as a final step of the analysis I want to give the users to view the analysis done. I have found a nice open source software for that last part and what I'd like to do is to execute that program from within my code so that...

I'll see if it needs improvements in the near future, as for know I think it's fine as it is. Since the script is meant to be run once or twice a month. What would be interesting is to read a newer input file, and update the output file by checking it to the net service without really going...

Well it's more like tens of thousands queries that go via SOAP. The process is slow on the remote part which I guess why it takes such a ridiculous process time. Acquire sub is separated from the main and appears in an eval mostly because every once in a while the remote server sends a...

Well the total execution time is around 24 hours :D however majority of it should be on the remote server side. However buffering does make sense. the close() comes last in the script pretty much before the termination.

Thanks guys for your interest and help, I have solved the problem over the weekend. I believe the biggest problem was the latency in the remote server, and for some reason the script prints out faster to the terminal than to a file.. Sorry for making such a fuss about it.. In retrospect, I...

Quick update: I have checked the permissions for the file, tried to add the print line right after the open statement, still nothing.. open my $ofh,">output" or die "could not open output file $!"; print $ofh "IPI-Uniprot-KEGG Id. conversion table\n"; and finally i have the following simple...

well there are no other loops, the codes I left out (places with ...) are simply the parts that refer to a specific server and have pretty much nothing to do with the printing part. Since the script prints just fine to the terminal, I presume that there's nothing wrong with that part of the...

Hi, I am having problems with a script that should write out to a file. Weird enough the file is generated but it's just empty.. I have tried to write out to terminal and that works fine.. I have tried a much simpler script to write out to a file and that works fine too... I am missing...